Manned planes take off with or without waypoints, I don't see the problem.
Just place a manned plane on the taxiway with a MOVE waypoint on his destination and he will take off automatically.
On Everon the airport is in the north (Saint Philippe), you have to place the plane with his nose to the south on the taxiway.
He will taxi, take the short turn, speed up and take off to the north.
After takeof he will make the necessary manoeuvres and turns and fly towards his destination waypoint where-ever that might be.
Use the "show textures" button in the right column of the editor, it makes it a lot easier to spot the runway.